Leipzig Summer School, Day 5 Viromics: Glossary

Key Points

Introduction & Setup
Lecture on Viruses and viromics
Break and Questions
Lecture on RDM and Virus Infrastructure
Lunch break
Project Explanation
Exploring viromics resources and files
  • Seqtk

  • fastqc

  • Fastp

Quality control and taxonomic profiling
  • Fastp, kraken2 using nf-core:taxprofiler

Virome Assembly and Bin Evaluation
  • MaxBin2, CheckV

Virus identification using geNomad
  • geNomad

Wrap Up

Glossary

FIXME